MorphoGraphX Tutorial 8: Growth Heat Map

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Abstract/Contents

Abstract: MorphoGraphX is an open-source image processing software designed to work with complex tissue. It allows for analysis of 3D stacks as well as time-lapse analysis at a scale that can detect fluorescence signals from individual cells. Here, I built tutorials for MorphoGraphX intended to help others learn the software for use on their own research. These tutorials step through the entire process of MorphoGraphX data analysis: set up and controls, creating a cell mesh, generating a 2.5D image from the mesh, segmenting the mesh, heat maps for the mesh, stitching of time-lapse images together, parent labeling for time-lapse analysis, growth heat maps for time-lapse, and principal directions of growth (PDGs) for time-lapse.

Type of resource	moving image
Date created	June 2017

Author	Cho, Nathan
Principal investigator	Bergmann, Dominique
Degree granting institution	Stanford University, Department of Biology, 2017

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License: This work is licensed under a Creative Commons Attribution Share Alike 3.0 Unported license (CC BY-SA).

Preferred Citation: Cho, Nathan and Bergmann, Dominique. (2017). MorphoGraphX Tutorial 8: Growth Heat Map. Stanford Digital Repository. Available at: http://purl.stanford.edu/yz910wp4360

Undergraduate Theses, Department of Biology, 2016-2017

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