Metagenomic Analysis of the Pregnancy Microbiome - Research Data
Abstract/Contents
- Abstract
- This item contains supplemental data from the publication "Metagenomic analysis with strain-level resolution reveals fine-scale variation in the human pregnancy microbiome". It includes assemblies from the three body sites studied for all subjects, Genbank files for genome bins from vaginal samples, protein sequences in fasta format predicted from the original assemblies, gene and protein abundance data tables, and R code.
Description
| Type of resource | software, multimedia |
|---|---|
| Date created | January 2014 - December 2017 |
Creators/Contributors
| Author | Aliaga Goltsman, Daniela S | |
|---|---|---|
| Author | Sun, Christine L | |
| Author | Proctor, Diana M | |
| Author | DiGiulio, Daniel B | |
| Author | Robaczewska, Anna | |
| Author | Thomas, Brian C | |
| Author | Shaw, Gary M | |
| Author | Stevenson, David K | |
| Author | Holmes, Susan P | |
| Author | Banfield, Jillian F | |
| Author | Relman, David A |
Subjects
| Subject | Department of Microbiology & Immunology Stanford University School of Medicine |
|---|---|
| Genre | Dataset |
Bibliographic information
| Related Publication | Aliaga Goltsman, D.S., et al. (2018). Metagenomic analysis with strain-level resolution reveals fine-scale variation in the human pregnancy microbiome. Genome Research, 28, 1467-1480. https://doi.org/10.1101/gr.236000.118 |
|---|---|
| Location | https://purl.stanford.edu/vp282bh3698 |
Access conditions
- Use and reproduction
- User agrees that, where applicable, content will not be used to identify or to otherwise infringe the privacy or confidentiality rights of individuals. Content distributed via the Stanford Digital Repository may be subject to additional license and use restrictions applied by the depositor.
- License
- This work is licensed under a Creative Commons Attribution Share Alike 3.0 Unported license (CC BY-SA).
Collection
Stanford Research Data
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- Contact
- dgolts@stanford.edu
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