Mechanism-guided design and application of palladium catalysts for alcohol oxidation and degradable polymers for RNA delivery

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Abstract/Contents

Abstract
Oxidation of alcohols is a fundamental transformation relevant to the synthesis of fine and commodity chemicals. The palladium complex [(neocuproine)Pd(μ-OAc)]2[OTf]2 is a selective catalyst for the aerobic oxidation of vicinal polyols to α-hydroxyketones, but competitive oxidation of the ligand methyl groups limits turnover number and necessitates high Pd loadings. In Chapter 1 we describe the development of more oxidatively robust palladium catalysts supported by 2,2'-biquinoline ligands. Evaluation of [(2,2'-biquinoline)Pd(μ-OAc)]2[OTf]2 as a catalyst for aerobic alcohol oxidation revealed a threefold enhancement in turnover number relative to the neocuproine congener, but a much slower rate. Mechanistic studies indicated that the slow observed rates were a consequence of precipitation of an insoluble trinuclear palladium species — [((2,2'-biquinoline)Pd)3(μ-O)2]2+ — formed during catalysis. Density functional theory was used to predict that a sterically modified biquinoline ligand, 7,7'-di-tert-butyl-2,2'-biquinoline, would disfavor the formation of the trinuclear [(LPd)3(μ-O)2]2+ species. This design strategy was validated, as catalytic aerobic oxidation with [(7,7'-di-tert-butyl-2,2'-biquinoline)Pd(μ-OAc)]2[OTf]2 is both robust and rapid, marrying the kinetics of the parent neocuproine-supported system with the high aerobic turnover numbers of the 2,2'-biquinoline-supported system. Selective and effective delivery of RNA is a key challenge for the development of gene therapies. Charge-Altering Releasable Transporters (CARTs) are a class of amphiphilic polymers that complex RNA, deliver it into cells, and then undergo degradation via structure-dependent mechanisms, thereby enabling RNA release. In Chapter 2 we report three classes of novel CART polymers: one derived from the amino acid ornithine (O-CARTs), one derived from the amino acid tyrosine (Y-CARTs), and one derived via statistical polymerization (statistical CARTs). O-CART/mRNA nanoparticles selectively deliver mRNA to the lung upon intravenous administration. Y-CARTs are also effective for mRNA delivery in vitro and in vivo, and preliminary data suggest that Y-CART/mRNA nanoparticles elicit protein expression in the spleen and the liver. Statistical CARTs with diverse structures are readily synthesized with a streamlined procedure, and statistical copolymers, upon complexation with mRNA, exhibit improved nanoparticle stability and equal or better performance for mRNA delivery compared to traditional block CART copolymers. In Chapter 3 we apply the CART RNA delivery platform in the development of a next-generation RNA vaccine against SARS-CoV-2. We show that CART/RNA formulations can be lyophilized, stored, and reconstituted while retaining efficacy for mRNA delivery, a key step towards the development of stable vaccine formulations. We demonstrate that CART polymers can effectively deliver self-amplifying RNA (saRNA), a promising class of RNA vaccine cargoes that have the potential to enable extended protein expression and dose-sparing effects. We also establish that CARTs are effective for the intradermal delivery of diverse RNA cargoes. In a final demonstration we show that intramuscular and intradermal CART/saRNA vaccines against SARS-CoV-2 elicit robust antibody responses in pigs. These efforts demonstrate the potential of CART amphiphiles as highly effective RNA transporters for research and clinical applications.

Description

Type of resource text
Form electronic resource; remote; computer; online resource
Extent 1 online resource.
Place California
Place [Stanford, California]
Publisher [Stanford University]
Copyright date 2023; ©2023
Publication date 2023; 2023
Issuance monographic
Language English

Creators/Contributors

Author Ramsay-Burrough, Summer
Degree supervisor Waymouth, Robert
Thesis advisor Waymouth, Robert
Thesis advisor Kool, Eric
Thesis advisor Wender, Paul
Degree committee member Kool, Eric
Degree committee member Wender, Paul
Associated with Stanford University, School of Humanities and Sciences
Associated with Stanford University, Department of Chemistry

Subjects

Genre Theses
Genre Text

Bibliographic information

Statement of responsibility Summer Ramsay-Burrough.
Note Submitted to the Department of Chemistry.
Thesis Thesis Ph.D. Stanford University 2023.
Location https://purl.stanford.edu/rt756gt0040

Access conditions

Copyright
© 2023 by Summer Ramsay-Burrough
License
This work is licensed under a Creative Commons Attribution Non Commercial 3.0 Unported license (CC BY-NC).

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