PERSIST-seq in solution stability data for Stanford OpenVaccine orders 16 and 17a, unmodified and pseudouridylated nanoluciferase mRNA, 06-24-21

Placeholder Show Content

Abstract/Contents

Abstract

Illumina sequencing data (FASTQ files) and associated sample sheets collected for unmodified as well as pseudouridylated nanoluciferase mRNA designs shown in Fig. 4 of the paper:
Leppek, K., Byeon, G.W., Kladwang, W. et al. Combinatorial optimization of mRNA structure, stability, and translation for RNA-based therapeutics. Nat Commun 13, 1536 (2022). https://doi.org/10.1038/s41467-022-28776-w
These are data collected to test whether in solution lifetimes measure in the pooled format of PERSIST-seq (Pooled Evaluation of mRNA in-solution Stability, and In-cell Stability and Translation RNA-seq) match lifetimes measured in one-by-one experiments. Note that preliminary analysis suggests that the experimental pipeline results in artifactual decay curves where some of the mRNA's appear to persist longer in the pooled experiment data than in one-by-one experiments, perhaps due to RT-PCR artefacts.

Description

Type of resource Dataset, text
Date created June 24, 2021
Date modified December 5, 2022
Publication date May 23, 2022; May 22, 2022

Creators/Contributors

Author Das, Rhiju ORCiD icon https://orcid.org/0000-0001-7497-0972 (unverified)
Author Kladwang, Wipapat

Subjects

Subject PERSIST-seq
Subject Pseudouridine
Subject Stability
Subject Vaccines
Subject nanoluciferase
Subject mRNA
Subject Messenger RNA
Genre Data
Genre Tabular data
Genre Data
Genre Data sets
Genre Dataset
Genre Tables (data)

Bibliographic information

Related item
DOI https://doi.org/10.25740/kb695qv0103
Location https://purl.stanford.edu/kb695qv0103

Access conditions

Use and reproduction
User agrees that, where applicable, content will not be used to identify or to otherwise infringe the privacy or confidentiality rights of individuals. Content distributed via the Stanford Digital Repository may be subject to additional license and use restrictions applied by the depositor.
License
This work is licensed under a Creative Commons Attribution 4.0 International license (CC BY).

Preferred citation

Preferred citation
Das, R. and Kladwang, W. (2022). PERSIST-seq in solution stability data for Stanford OpenVaccine orders 16 and 17a, unmodified and pseudouridylated nanoluciferase mRNA, 06-24-21. Stanford Digital Repository. Available at https://purl.stanford.edu/kb695qv0103

Collection

Contact information

Also listed in

Loading usage metrics...