R programs and data sets that are supplementary material for PNAS article: Temporal and Spatial Variation of the Human Microbiota during Pregnancy.

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Abstract/Contents

Abstract
These are all the RData, R code as Rmd files and their output as html files that accompany the PNAS paper on the Temporal and Spatial Variation of the Human Microbiota during Pregnancy.

Description

Type of resource software, multimedia
Date created June 28, 2015

Creators/Contributors

Author DiGiulio, Dan
Author Callahan, Benjamin
Author McMurdie, Paul Joseph
Author Costello, Elizabeth
Author Lyell, Deidre
Author Robaczewska, Anna
Author Sun, Christine
Author Goltsman, Daniela
Author Wong, Ronald
Author Shaw, Gary
Author Stevenson, David
Author Holmes, Susan P
Author Relman, David A

Subjects

Subject Microbiome
Subject R
Subject phyloseq
Subject vaginal
Subject preterm birth
Subject Statistics department
Subject Immunology
Subject School of Medicine.

Bibliographic information

Related Publication

Temporal and spatial variation of the human microbiota during pregnancy
Daniel B. DiGiulio, Benjamin J. Callahan, Paul J. McMurdie, Elizabeth K. Costello, Deirdre J. Lyell, Anna Robaczewska, Christine L. Sun, Daniela S. A. Goltsman, Ronald J. Wong, Gary Shaw, David K. Stevenson, Susan P. Holmes, and David A. Relman
PNAS 2015 ; published ahead of print August 17, 2015, doi:10.1073/pnas.1502875112

Related item
Location https://purl.stanford.edu/hg140kw6221

Access conditions

Use and reproduction
User agrees that, where applicable, content will not be used to identify or to otherwise infringe the privacy or confidentiality rights of individuals. Content distributed via the Stanford Digital Repository may be subject to additional license and use restrictions applied by the depositor.
License
This work is licensed under a Creative Commons Attribution Non Commercial 3.0 Unported license (CC BY-NC).

Preferred citation

Preferred Citation
Reproducible Research Supplementary Information to PNAS article Temporal and spatial variation of the human microbiota during pregnancy, August 2015.

Collection

Reproducible Research Support for Statistics of the Microbiome

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