Metagenome-assembled genomes associated with the paper 'Tracking microbial evolution in the human gut using Hi-C reveals extensive horizontal gene transfer, persistence and adaptation'
Abstract/Contents
- Abstract
- This dataset includes Metagenome-assembled genomes (MAGs) recovered from the gut micriobiome of two healthy subjects. Attributed of the MAGs are specified in a table for each subject. Table columns are id (MAG identifier), length_bp (length of MAG in basepairs), accession (NCBI accession of closest reference genome), species_name (species taxon name of closest reference genome), strain_name (strain taxon name of closest reference genome, if relevant), core_fraction (percentage of MAG sequence that maps successfully to the reference genome), and core_identity (average nucleotide identity of MAG sequence that maps successfully to the reference genome).
Description
| Type of resource | software, multimedia |
|---|---|
| Date created | 2019 |
Creators/Contributors
| Author | Yaffe, Eitan | |
|---|---|---|
| Author | Relman, David A. |
Subjects
| Subject | MAGs |
|---|---|
| Subject | Hi-C |
| Genre | Dataset |
Bibliographic information
| Related Publication | Yaffe, E., Relman, D.A. Tracking microbial evolution in the human gut using Hi-C reveals extensive horizontal gene transfer, persistence and adaptation. Nat Microbiol 5, 343–353 (2020). https://doi.org/10.1038/s41564-019-0625-0 |
|---|---|
| Location | https://purl.stanford.edu/fd871xp9063 |
Access conditions
- Use and reproduction
- User agrees that, where applicable, content will not be used to identify or to otherwise infringe the privacy or confidentiality rights of individuals. Content distributed via the Stanford Digital Repository may be subject to additional license and use restrictions applied by the depositor.
Preferred citation
- Preferred Citation
- Eitan Yaffe and David A. Relman. (2019). Metagenome-assembled genomes associated with the paper 'Tracking microbial evolution in the human gut using Hi-C reveals extensive horizontal gene transfer, persistence and adaptation'. Stanford Digital Repository. Available at: https://purl.stanford.edu/fd871xp9063
Collection
Stanford Research Data
View other items in this collection in SearchWorksContact information
- Contact
- eitan.yaffe@stanford.edu
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