BREIN (Brain Region Expression Intensity Neuroanalysis) Application

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Abstract/Contents

Abstract: BREIN (Brain Region Expression Intensity Neuroanalysis) App is a comprehensive tool that takes an initial brain image, anatomically registers it, calculates the signal intensity per brain region, and outputs a spreadsheet of the results, all through a single streamlined workflow. It analyzes RNA in-situ hybridization or immunohistochemical images, and can be used to map expression patterns and neuroanatomical circuits. This Java-based application can be run on any Windows device. BREIN has the advantage of being intuitive to use and completely self-contained—the user can upload an image and end up with final results in mere minutes, no post-processing necessary.

DOI	https://doi.org/10.25740/dj344ss4663
Location	https://purl.stanford.edu/dj344ss4663

Use and reproduction: User agrees that, where applicable, content will not be used to identify or to otherwise infringe the privacy or confidentiality rights of individuals. Content distributed via the Stanford Digital Repository may be subject to additional license and use restrictions applied by the depositor.
License: This work is licensed under a Creative Commons Attribution 4.0 International license (CC BY).

Preferred citation: Refaee, R. (2023). BREIN (Brain Region Expression Intensity Neuroanalysis) Application. Stanford Digital Repository. Available at https://purl.stanford.edu/dj344ss4663. https://doi.org/10.25740/dj344ss4663.

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