Activation pathway of Src kinase reveals intermediate states as targets for drug design

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Abstract/Contents

Abstract

This dataset contains following items:
1) MD Simulation trajectories (~23000 Trajectories for a total simulation of ~450 microseconds with frames stores at 100 ps) containing only the protein atoms in lh5 format. The lh5 format files could be converted into any other MD trajectory format using MDTraj program (http://mdtraj.org).
2) 2000 State MSM model of c-src tyrosine kinase built from the MD simulation data.
3) 100 microseconds long trajectory with 20000 frames at an interval of 5 ns generated using the MSM.

Description

Type of resource software, multimedia
Date created [ca. July 2012 - February 2013]

Creators/Contributors

Author Shukla, Diwakar
Author Meng, Yilin
Author Roux, Benoit
Author Pande, Vijay

Subjects

Subject Chemistry
Subject H&S
Subject Stanford University
Genre Dataset

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Use and reproduction
User agrees that, where applicable, content will not be used to identify or to otherwise infringe the privacy or confidentiality rights of individuals. Content distributed via the Stanford Digital Repository may be subject to additional license and use restrictions applied by the depositor.
License
This work is licensed under a Creative Commons Attribution Share Alike 3.0 Unported license (CC BY-SA).

Preferred citation

Preferred Citation
Diwakar Shukla, Yilin Meng, Benoît Roux & Vijay S. Pande. Activation pathway of Src kinase reveals intermediate states as targets for drug design. Nature Communications 5, Article number: 3397 doi:10.1038/ncomms4397

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