Activation pathway of Src kinase reveals intermediate states as targets for drug design
Abstract/Contents
- Abstract
This dataset contains following items:
1) MD Simulation trajectories (~23000 Trajectories for a total simulation of ~450 microseconds with frames stores at 100 ps) containing only the protein atoms in lh5 format. The lh5 format files could be converted into any other MD trajectory format using MDTraj program (http://mdtraj.org).
2) 2000 State MSM model of c-src tyrosine kinase built from the MD simulation data.
3) 100 microseconds long trajectory with 20000 frames at an interval of 5 ns generated using the MSM.
Description
Type of resource | software, multimedia |
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Date created | [ca. July 2012 - February 2013] |
Creators/Contributors
Author | Shukla, Diwakar | |
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Author | Meng, Yilin | |
Author | Roux, Benoit | |
Author | Pande, Vijay |
Subjects
Subject | Chemistry |
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Subject | H&S |
Subject | Stanford University |
Genre | Dataset |
Bibliographic information
Related item | |
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Location | https://purl.stanford.edu/cm993jk8755 |
Access conditions
- Use and reproduction
- User agrees that, where applicable, content will not be used to identify or to otherwise infringe the privacy or confidentiality rights of individuals. Content distributed via the Stanford Digital Repository may be subject to additional license and use restrictions applied by the depositor.
- License
- This work is licensed under a Creative Commons Attribution Share Alike 3.0 Unported license (CC BY-SA).
Preferred citation
- Preferred Citation
- Diwakar Shukla, Yilin Meng, Benoît Roux & Vijay S. Pande. Activation pathway of Src kinase reveals intermediate states as targets for drug design. Nature Communications 5, Article number: 3397 doi:10.1038/ncomms4397
Collection
Folding@home Collection
View other items in this collection in SearchWorksContact information
- Contact
- diwakarshukla@gmail.com
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